Arup Ghosh

Arup Ghosh

PhD student

Infectious Disease Biology, Institute of Life Sciences

I am a computational biology Ph.D. student at the Institute of Life Sciences, India investigating antimicrobial resistance development in Mycobacterium tuberculosis. Using whole genome sequencing datasets of the bacteria my goal is to understand the association between genomic variants and drug resistance phenotypes.

I also have a great interest in the application of machine learning in genomic data and biomedical data science to predict and extract insightful information from large scale datasets.

Apart from research, I am a member of eLife Community Ambassadors and ASAPbio Ambassadors programme promoting open science, preprints, reproducibility in research.

When you’ve written the same code 3 times, write a function. - David Robinson

Interests

  • Bacterial Genomics
  • Gene Regulation
  • Machine Learning
  • Biomedical Data Science
  • Single-cell Genomics

Education

  • Pursung Ph.D., 2016

    Institute of Life Sciences, Bhubaneswar

  • MS (Pharm), 2016

    National Institute of Pharmaceutical Education & Research

  • Bachelor of Pharmacy, 2014

    West Bengal University of Health Sciences

Publications

BedSect: An Integrated Web Server Application to Perform Intersection, Visualization, and Functional Annotation of Genomic Regions From Multiple Datasets

A large number of genomic regions, such as transcription factor binding sites (TFBSs) captured from next generation sequencing (NGS) …

EumicrobeDBLite: a lightweight genomic resource and analytic platform for draft oomycete genomes

Summary We have developed EumicrobeDBLite—a lightweight comprehensive genome resource and sequence analysis platform for oomycete …

Importance of EMT Factor ZEB1 in cDC1 “MutuDC Line” Mediated Induction of Th1 Immune Response

The role of Epithelial to Mesenchymal Transition (EMT) factor Zeb1 is well defined in metastasis and cancer progression but it’s …

Recent Posts

How to Install Jupyter Notebook and Start a Notebook Server on CentOS 7

A guide to installing and setting up a Jupyter notebook server with Python 2.7 and 3 kernels for a local network in RHEL 7/Centos7/Oracle Linux 7. First install the required dependencies for Jupyter notebook.

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