Publications

Publications in chronological order.

2023

  1. FtsE, the Nucleotide Binding Domain of the ABC Transporter Homolog FtsEX, Regulates Septal PG Synthesis in E. coli
    Sunanda Mallik, Hiren Dodia, Arup Ghosh, and 4 more authors
    Microbiology Spectrum, 2023
  2. NCoR1 controls Mycobacterium tuberculosis growth in myeloid cells by regulating the AMPK-mTOR-TFEB axis
    Viplov Kumar Biswas, Kaushik Sen, Abdul Ahad, and 8 more authors
    PLoS Biology, 2023
  3. NCoR1: a key player regulating mycobacterium tuberculosis pathogenesis
    Kaushik Sen, Viplov Kumar Biswas, Arup Ghosh, and 5 more authors
    Autophagy, 2023

2022

  1. Spatio-temporal dynamics of intra-host variability in SARS-CoV-2 genomes
    Ankit K Pathak, Gyan Prakash Mishra, Bharathram Uppili, and 8 more authors
    Nucleic acids research, 2022
  2. Long-read 16S-seq reveals nasopharynx microbial dysbiosis and enrichment of Mycobacterium and Mycoplasma in COVID-19 patients: a potential source of co-infection
    Punit Prasad, Soumendu Mahapatra, Rasmita Mishra, and 8 more authors
    Molecular Omics, 2022
  3. Genotypic and phenotypic diversity of the multidrug-resistant Mycobacterium tuberculosis strains from eastern India
    Arup Ghosh, Himadri Bal, Viplov Kumar Biswas, and 3 more authors
    bioRxiv, 2022
  4. Genomic profiles of vaccine breakthrough SARS-CoV-2 strains from Odisha, India
    Arup Ghosh, Safal Walia, Roma Rattan, and 8 more authors
    International Journal of Infectious Diseases, 2022
  5. Isolation and characterization of 5 SARS CoV-2 strains of different clades and lineages circulating in Eastern India
    Bharati Singh, Kiran Avula, Sanchari Chatterjee, and 8 more authors
    Frontiers in Microbiology, 2022
  6. CMTM6 attenuates cisplatin-induced cell death in OSCC by regulating AKT/c-Myc-driven ribosome biogenesis
    Pallavi Mohapatra, Sibasish Mohanty, Shamima Azma Ansari, and 7 more authors
    The FASEB Journal, 2022

2021

  1. Sequence analysis of Indian SARS-CoV-2 isolates shows a stronger interaction of mutant receptor-binding domain with ACE2
    Pujarini Dash, Jyotirmayee Turuk, Santosh K Behera, and 8 more authors
    International Journal of Infectious Diseases, 2021
  2. Differential mitochondrial genome in patients with Rheumatoid Arthritis
    Kumar Sagar Jaiswal, Shweta Khanna, Arup Ghosh, and 3 more authors
    Autoimmunity, 2021
  3. CMTM6 drives cisplatin resistance by regulating Wnt signaling through the ENO-1/AKT/GSK3βaxis
    Pallavi Mohapatra, Omprakash Shriwas, Sibasish Mohanty, and 8 more authors
    JCI insight, 2021
  4. Zbtb10 transcription factor is crucial for murine cDC1 activation and cytokine secretion
    Shuchi Smita, Arup Ghosh, Viplov Kumar Biswas, and 6 more authors
    European Journal of Immunology, 2021
  5. Quantitative proteomics of hamster lung tissues infected with SARS-CoV-2 reveal host factors having implication in the disease pathogenesis and severity
    Voddu Suresh, Varshasnata Mohanty, Kiran Avula, and 8 more authors
    The FASEB Journal, 2021
  6. Single-Cell Immunogenomic Approach Identified SARS-CoV-2 Protective Immune Signatures in Asymptomatic Direct Contacts of COVID-19 Cases
    Kaushik Sen, Sudeshna Datta, Arup Ghosh, and 8 more authors
    Frontiers in Immunology, 2021
  7. Clinical, Virological, Immunological, and Genomic Characterization of Asymptomatic and Symptomatic Cases With SARS-CoV-2 Infection in India
    Sanchari Chatterjee, Ankita Datey, Soumya Sengupta, and 8 more authors
    Frontiers in cellular and infection microbiology, 2021

2020

  1. BedSect: an integrated web server application to perform intersection, visualization, and functional annotation of genomic regions from multiple datasets
    Gyan Prakash Mishra, Arup Ghosh, Atimukta Jha, and 1 more author
    Frontiers in Genetics, 2020
  2. PAN-INDIA 1000 SARS-CoV-2 RNA genome sequencing reveals important insights into the outbreak
    Arindam Maitra, Sunil Raghav, Ashwin Dalal, and 8 more authors
    BioRxiv, 2020
  3. Analysis of Indian SARS-CoV-2 genomes reveals prevalence of D614G mutation in spike protein predicting an increase in interaction with TMPRSS2 and virus infectivity
    Sunil Raghav, Arup Ghosh, Jyotirmayee Turuk, and 8 more authors
    Frontiers in Microbiology, 2020
  4. ANN: A platform to annotate text with Wikidata IDs
    Tiago Lubiana, Sabine Weber, Bruno Andrade Paranhos, and 6 more authors
    2020
  5. Altered mitochondrial proteome and functional dynamics in patients with rheumatoid arthritis
    Shweta Khanna, Prasanta Padhan, Kumar S Jaiswal, and 6 more authors
    Mitochondrion, 2020

2019

  1. Epigenetics and Epigenomics Analysis for Autoimmune Diseases
    Bhawna Gupta, Kumar Sagar Jaiswal, Arup Ghosh, and 1 more author
    In Computational Epigenetics and Diseases, 2019

2018

  1. EumicrobeDBLite: a lightweight genomic resource and analytic platform for draft oomycete genomes
    Arijit Panda, Diya Sen, Arup Ghosh, and 6 more authors
    Molecular plant pathology, 2018
  2. Importance of EMT factor ZEB1 in cDC1 “MutuDC line” mediated induction of Th1 immune response
    Shuchi Smita, Abdul Ahad, Arup Ghosh, and 5 more authors
    Frontiers in immunology, 2018